Fluffy Cheese Stuffed Pretzel Bites

These Cheese Stuffed Soft Pretzel Bites are golden, fluffy, and irresistibly cheesy, making them the ultimate savory snack.

Packed with protein from the cheddar and a modest amount of fiber from whole ingredients, they provide a satisfying bite without feeling heavy.

Quick to make and perfect for snacking or entertaining, they’re a deliciously convenient everyday treat.

Cheese Stuffed Pretzel Bites

Karina Kari
Golden, soft pretzel bites filled with melted cheddar cheese, lightly salted, and baked to perfection.
A perfect snack or appetizer that’s quick, satisfying, and fun to make.
Prep Time 25 minutes
Cook Time 18 minutes
Total Time 43 minutes
Course Appetizer, Snack
Cuisine American
Servings 24

Equipment

  • Large mixing bowl (1)
  • Measuring cups and spoons (1 set)
  • Large pot – 1
  • Slotted spoon or spatula – 1
  • Baking sheets (2)
  • Parchment paper or nonstick spray – as needed
  • Whisk (1)

Ingredients
  

For the Pretzel Dough:

  • 2 ¼ tsp instant yeast
  • 1 ½ cups warm water
  • 1 tsp salt
  • 1 TBS brown sugar
  • 2 TBS melted butter
  • 4 cups all-purpose flour

For the Filling:

  • 12 oz white cheddar cheese cut into 24 cubes
  • For the Baking Soda Bath:
  • 9 cups water
  • ½ cup baking soda

For Baking:

  • 1 large egg
  • 1 TBS water
  • Coarse sea salt for sprinkling

Instructions
 

  • Activate the Yeast: Begin by pouring 1 1/2 cups of warm water into a large mixing bowl.
    The water should be comfortably warm—around 105–110°F (40–43°C)—so it’s warm to the touch but not hot, which could kill the yeast.
    Sprinkle 2 1/4 teaspoons of instant yeast over the water and stir gently for about one minute.
    Let it sit for 2–3 minutes until the yeast starts to foam lightly.
    This indicates that the yeast is active and ready to help your dough rise.
  • Mix in the Flavor Base: Once the yeast is foamy, add 1 teaspoon of salt, 1 tablespoon of brown sugar, and 2 tablespoons of melted butter to the bowl.
    Stir everything together until well combined.
    The sugar will help feed the yeast, the butter adds richness, and the salt enhances the flavor of the pretzel dough.
  • Incorporate the Flour: Gradually add 4 cups of all-purpose flour to the wet mixture, one cup at a time.
    Use a wooden spoon or your hands to mix until the dough becomes thick and less sticky.
    If needed, add extra flour in one-tablespoon increments until the dough can be handled without sticking to your fingers.
    You want a soft, pliable dough that bounces back slightly when pressed.
  • Knead the Dough: Lightly flour a clean surface and transfer the dough onto it.
    Knead the dough for 3–5 minutes by pressing it with the heels of your hands, folding it over, and turning it.
    This develops the gluten, which gives the pretzels their chewy texture.
    Once smooth and elastic, form the dough into a ball.
  • First Rise: Coat a large bowl with nonstick spray or a small amount of oil.
    Place the dough ball inside, turning it once to coat all sides lightly.
    Cover the bowl with a clean kitchen towel and set it in a warm, draft-free area.
    Let the dough rise for 30 minutes, or until it doubles in size.
    This resting period allows the dough to become airy and soft.
  • Prepare the Cheese Filling: While the dough rises, cut 12 ounces of white cheddar cheese into 24 equal cubes.
    This will ensure each pretzel bite has a consistent, gooey cheese center.
    Set the cheese aside at room temperature so it’s ready to use once the dough is prepared.
  • Preheat the Oven: Preheat your oven to 425°F (220°C).
    Line two baking sheets with parchment paper or lightly grease them with nonstick spray.
    Preheating ensures that your pretzels will bake evenly and develop a golden crust.
  • Prepare the Baking Soda Bath: Bring 9 cups of water to a gentle boil in a large pot.
    Slowly add 1/2 cup of baking soda to the water (be careful, as it will bubble up).
    Stir briefly to dissolve the soda completely.
    This alkaline bath gives the pretzels their classic chewy texture and deep golden-brown color when baked.
  • Portion the Dough: Once the dough has doubled in size, punch it down gently to release excess air.
    Transfer it to a lightly floured surface and cut the dough into 24 equal pieces.
    Each piece should be roughly the size of a golf ball to ensure uniform pretzel bites.
  • Stuff and Shape the Pretzel Bites: Flatten each dough piece into a small disk with your hands.
    Place one cheese cube in the center of the dough.
    Fold the edges over the cheese, pinching them together securely to seal the filling.
    Roll each piece gently between your palms to form a smooth, round ball, making sure no cheese is exposed.
    This step ensures the cheese melts inside without leaking during baking.
  • Boil the Pretzel Bites: Carefully drop the prepared pretzel balls into the boiling baking soda bath, a few at a time.
    Boil each ball for about 30 seconds.
    Use a slotted spoon to remove the pretzels, letting excess water drip back into the pot.
    Placing the pretzels in the bath helps create the chewy exterior and gives them that iconic pretzel flavor.
  • Prepare for Baking: Place the boiled pretzel bites onto the prepared baking sheets, spacing them evenly to prevent sticking.
    In a small bowl, whisk together 1 egg and 1 tablespoon of water to create an egg wash.
    Brush the top of each pretzel ball generously with the egg wash to achieve a glossy, golden finish during baking.
    Sprinkle coarse sea salt on top according to your taste.
  • Bake to Perfection: Bake the pretzel bites in the preheated oven for 16–18 minutes.
    Keep an eye on them the tops should turn a rich golden brown, and the edges should feel firm to the touch.
    The cheese inside will melt, creating a gooey center while the outside stays soft and chewy.
  • Cool and Serve: Once baked, remove the pretzel bites from the oven and allow them to cool on the baking sheets for 2–3 minutes.
    Serve warm for the best texture and melted cheese experience.
    These pretzel bites are perfect as a snack, appetizer, or party treat, and they pair wonderfully with mustard, cheese sauce, or your favorite dipping sauces.

Notes

  • Use warm water, not hot, to activate the yeast properly; too-hot water can kill it.
  • Knead the dough until smooth and elastic to ensure a soft, chewy texture.
  • Cut the cheese into equal-sized cubes to ensure even melting in each pretzel bite.
  • Don’t skip the baking soda bath—this step gives the pretzels their signature golden crust and chewy exterior.
  • Brush with egg wash right before baking for a glossy, golden finish and better salt adhesion.
  • Serve immediately for the best experience; pretzel bites are warm, cheesy, and perfectly soft when fresh.

Chef’s Secrets: Master Pretzel Making Tricks

Creating perfect pretzel bites requires a few insider techniques.

First, allow the dough to rise in a warm, draft-free area; this encourages a fluffy, airy interior.

For extra flavor, you can brush melted butter over the pretzels after baking, then sprinkle a pinch of garlic powder or smoked paprika.

Using high-quality white cheddar gives a creamy, tangy melt.

Always handle the dough gently to avoid tearing, which could cause the cheese to leak.

Finally, timing in the baking soda bath is crucial 30 seconds is ideal for the classic chewy texture without making the exterior too tough.

Serving Suggestions: Delicious Ways To Enjoy

These cheese-filled pretzel bites are versatile and can complement a variety of meals.

Serve them as a fun appetizer at parties or family gatherings.

Pair them with spicy mustard, creamy cheese sauce, or even a tangy marinara dip for extra flavor.

They also work well alongside soups, salads, or charcuterie boards.

For a kid-friendly snack, offer them with ketchup or a mild ranch dip.

Serve warm for the gooey cheese experience, or slightly cooled for easy snacking on the go.

Storage Tips: Keep Pretzels Fresh Longer

Pretzel bites are best enjoyed fresh but can be stored to extend their life.

Allow them to cool completely, then place in an airtight container at room temperature for up to 2 days.

For longer storage, freeze baked pretzel bites in a sealed freezer bag for up to 1 month.

Reheat in a preheated oven at 350°F (175°C) for 5–8 minutes to restore their soft, chewy texture.

Avoid microwaving, as it can make the pretzels rubbery.

Always store separately from sauces to maintain the perfect crust.

Frequently Asked Questions

1. Can I use a different type of cheese?

Yes! While white cheddar gives a tangy, melty center, you can experiment with mozzarella for stretchiness, pepper jack for a spicy kick, or gouda for a creamy flavor. Just cut into small cubes to ensure even melting.

2. Can I make these pretzels ahead of time?

You can prepare the dough and shape the pretzels a few hours in advance. Keep them covered in the refrigerator to prevent drying out, then boil and bake just before serving.

3. Can I make these pretzels gluten-free?

Yes, but it requires a high-quality gluten-free all-purpose flour blend with xanthan gum. The texture may be slightly different, but the flavor will still be delicious.

4. How do I prevent cheese from leaking out?

Make sure the dough is fully wrapped and pinched tightly around the cheese. Avoid overfilling, and gently roll into smooth balls to seal the edges before boiling.

5. Can I skip the baking soda bath?

The baking soda bath is essential for that classic pretzel chewiness and golden color. Skipping it will result in a softer, bread-like texture without the distinctive pretzel flavor and crust.